2. Introduction to Python for biological circuits


Design principle

  • A cascade can filter out high frequency fluctuations.

Techniques

  • Nondimensionalization.

  • Numerical solution of ODEs using scipy.integrate.odeint().

  • Interactive plotting.


[1]:
import numpy as np
import scipy.integrate

import bokeh.io
import bokeh.plotting

import panel as pn

import colorcet

bokeh.io.output_notebook()
pn.extension()
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